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Molecular Plant Advance Access published online on November 10, 2009

Molecular Plant, doi:10.1093/mp/ssp090
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© The Author 2009. Published by the Molecular Plant Shanghai Editorial Office in association with Oxford University Press on behalf of CSPP and IPPE, SIBS, CAS.

The ARABIDOPSIS Accession Pna-10 Is a Naturally Occurring sng1 Deletion Mutant

Xu Lia, Joy Bergelsonb and Clint Chapplea,1

a Department of Biochemistry, Purdue University, 175 South University Street, West Lafayette, IN 47907, USA
b Department of Ecology and Evolution, University of Chicago, Chicago, IL 60637, USA

1 To whom correspondence should be addressed. E-mail: chapple{at}purdue.edu, fax 765-494-7897, tel. 765-494-0494.

Sinapoylmalate is the major sinapate ester found in leaves of Arabidopsis thaliana, where it plays an important role in UV-B protection. Metabolic profiling of rosette leaves from 96 Arabidopsis accessions revealed that the Pna-10 accession accumulates sinapoylglucose instead of sinapoylmalate. This unique leaf sinapate ester profile is similar to that of the previously characterized sinapoylglucose accumulator1 (sng1) mutants. SNG1 encodes sinapoylglucose:malate sinapoyltransferase (SMT), a serine carboxypeptidase-like (SCPL) enzyme that catalyzes the conversion of sinapoylglucose to sinapoylmalate. In the reference Columbia genome, the SNG1 gene is located in a cluster of five SCPL genes on Chromosome II. PCR and sequencing analysis of the same genomic region in the Pna-10 accession revealed a 13-kb deletion that eliminates the SNG1 gene (At2g22990) and the gene encoding sinapoylglucose:anthocyanin sinapoyltransferase (SAT) (At2g23000). In addition to its sinapoylmalate-deficient phenotype, and consistent with the loss of SAT, Pna-10 is unable to accumulate sinapoylated anthocyanins. Interestingly, the Pna-17 accession, collected from the same location as Pna-10, has no such deletion. Further analysis of 135 lines collected from the same location as Pna-10 and Pna-17 revealed that four more lines contain the deletion found in Pna-10 accession, suggesting that either the deletion found in Pna-10 is a recent event that has not yet been eliminated through selection or that sinapoylmalate is dispensable for the growth of Arabidopsis under field conditions.

Key Words: Secondary metabolism—phenylpropanoids and phenolics • fluorescence imaging • Arabidopsis • deletion • natural variation • sinapoylmalate


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